DATABASES ON MEDICINE AND MOLECULAR BIOLOGY
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ArrayExpress"  info
 

ArrayExpress is a public database of gene expression experiments. These experiments consist of multiple parts (or objects), in order to simplify querying we have provided a query interface which allows you to retrieve the most useful information relating to each experiment, the array(s) and the protocols(s) used.
http://www.ebi.ac.uk/arrayexpress/

Xenopus laevis Database Focusing on Gene Expression"  info
 

Axeldb is a database storing and integrating gene expression patterns and DNA sequences identified in a large-scale in situ hybridization study in Xenopus laevis embryos. The database was developed at the German Cancer Research Center (Deutsches Krebsforschungszentrum, DKFZ) in Heidelberg.
http://www.dkfz-heidelberg.de/molecular_embryology/axeldb.htm

CleanEx"  info
 

CleanEx is a database which provides access to public gene expression data via unique approved gene symbols and which represents heterogeneous expression data produced by different technologies in a way that facilitates joint analysis and cross-dataset comparisons.
http://www.cleanex.isb-sib.ch/

CREB Target Gene Database"  info
 

In mammalian cells, an elevation in the cytosolic cAMP level stimulates the expression of many genes. All genes regulated by cAMP contain a cis-acting DNA sequence, called cAMP-response element (CRE), which binds the phosphorylated form of a transcription factor called CRE-binding (CREB) protein. Researchers can find out which genes the influential protein activates at the CREB Target Gene Database from Marc Montminy of the Salk Institute in La Jolla, California, and colleagues.
http://natural.salk.edu/CREB/

Edinburgh Mouse Atlas Project
 

The Edinburgh Mouse Atlas consists of a digital atlas of mouse embryo development and spatially-mapped gene expression.
http://genex.hgu.mrc.ac.uk/

Endocrine Pancreas Consortium Database"  info
 

Genexpression database of the Endocrine Pancreas Consortium.
http://www.cbil.upenn.edu/EPConDB/

Erythropoiesis Database"  info
 

The EpoDB (Erythropoiesis database) is a database of genes that relate to vertebrate red blood cells. It includes DNA sequence, structural features, protein information, gene expression information and transcription factor binding sites. The database ist provided by the Computational Biology and Informatics Laboratory at the University of Pennsylvania.
http://www.cbil.upenn.edu/EpoDB/

Microarray Gene Annotation (GeneAnnot)"  info
 

Revised and improved annotation of Affymetrix human gene probe sets.
http://genecards.weizmann.ac.il/geneannot/

"  info
 

GeneNote is a database of human genes and their expression profiles in healthy tissues. It is based on Weizmann Institute of Science DNA array experiments, which were performed on the Affymetrix HG-U95 set A-E. It offers:

  • An expression profile (tissue vector) for each gene in the human genome
  • Gene and tissue clustering based on expression profiles
  • A full genome ranking procedure according to the gene's tendency for tissue specificity, from tissue-specific to housekeeping genes.
    http://genecards.weizmann.ac.il/genenote/

  • GenePaint"  info
     

    GenePaint is a digital atlas of gene expression patterns in the mouse.
    http://www.genepaint.org

    Gene Expression Omnibus"  info
     

    The Gene Expression Omnibus is a high-throughput gene expression / molecular abundance data repository, as well as a curated, online resource for gene expression data browsing, query and retrieval. GEO became operational in July 2000.
    http://www.ncbi.nlm.nih.gov/geo/

    GermOnline"  info
     

    GermOnline is a database that provides access to microarray expression data from experiments relevant for the mitotic and meiotic cell cycle as well as gametogenesis in yeast and higher eukaryotes. In addition to that, GermOnline integrates knowledge about genes important for sexual reproduction.
    http://www.germonline.org/

    Mouse Gene Expression Database
     

    Gene expression database from the mouse.
    http://www.informatics.jax.org/mgihome/GXD/aboutGXD.shtml

    Hembase"  info
     

    Hembase is an integrated browser and genome portal designed for web-based examination of the human erythroid transcriptome.
    http://hembase.niddk.nih.gov/

    Human Gene Expression Index (HuGE Index)"  info
     

    Human Gene Expression Index (HuGE Index) aims to provide a comprehensive database to aid in understanding the expression of human genes in normal human tissues.
    The mRNA expression levels of thousands of genes in a collection of normal human organs were obtained using high-density oligonucleotide array technology and deposited in this public database.
    http://zlab.bu.edu/HugeSearch/nph-HugeSearch.cgi

    Interferon Stimulated Gene Database
     

    Database about genes induced by treatment with interferons.
    http://www.lerner.ccf.org/labs/williams/xchip-html.cgi

    Kidney Development Database
     

    The Kidney Development Database was created to collect in one place the data from a large number of developmental studies that have a bearing on the study of kidney development.
    http://golgi.ana.ed.ac.uk/kidhome.html

    Leukemia Gene Atlas
     

    The Leukemia Gene Atlas (LGA) is a public platform that supports the research and analysis of molecular data of leukemias. In addition to the molecular data the LGA stores the corresponding clinical and laboratory data. The LGA supports comprehensive queries of data, the visualization and analysis as well as download and upload. Currently, there are gene expression, methylation, sequencing data and genotypes of over 6000 samples in the LGA. To analyze data the user may choose between a set of tools: cluster analyses, statistical tests, data distribution plots and the Integrative Genomics Viewer (IGV).
    http://www.leukemia-gene-atlas.org/

    DNA Methylation Database"  info
     

    Database of DNA methylation.
    http://www.methdb.de

    NetAffx Analysis Center"  info
     

    NetAffx details and annotates probesets on Affymetrix GeneChip microarrays. These annotations include (i) static information specific to the probeset composition; (ii) sequence annotations extracted from public databases; and (iii) protein sequence-level annotations derived from public domain programs, as well as libraries of hidden Markov models (HMMs) developed at Affymetrix.
    http://www.affymetrix.com/analysis/index.affx

    Ovarian Kaleidoscope Database"  info
     

    The Ovarian Kaleidoscope database (OKdb) is a collaborative online resource for scientists investigating the ovary. It provides information regarding the biological function, expression pattern, and regulation of genes expressed in the ovary, as well as for the phenotypes associated with their mutation.
    http://ovary.stanford.edu/

    Public Expression Profiling Resource (pepr)"  info
     

    Public expression profiling resource provides expression profiles in a variety of diseases and conditions.
    http://pepr.cnmcresearch.org/

    Database of the Translational Recoding Events (recode)"  info
     

    The RECODE database is a compilation of translational recoding events (programmed ribosomal frameshifting, codon redefinition and translational bypass). The database provides information about the genes utilizing these events for their expression, recoding sites, stimulatory sequences and other relevant information.
    http://recode.genetics.utah.edu/

    REFerence database for Gene EXpression Analysis"  info
     

    Database for gene expression analysis.
    http://157.82.78.238/refexa/main_search.jsp

    Stanford Microarray Database"  info
     

    SMD stores raw and normalized data from microarray experiments, as well as their corresponding image files. In addition, SMD provides interfaces for data retrieval, analysis and visualization.
    http://genome-www5.stanford.edu/

    Gene Expression in Tooth
     

    Database about the geneexpression in tooth.
    http://bite-it.helsinki.fi/

    WebQTL Project"  info
     

    WebQTL stors data about gene expression, neuropharmacological,anatomical, and behavioral data for over 30 strains of mice.
    http://www.webqtl.org/