CarpeDB is a epilepsy genetics database. It profiles some 400 genes linked to epilepsy in humans, mice, nematodes, and other organisms.
http://www.carpedb.ua.edu/

The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human protein coding regions that are consistently annotated and of high quality.
http://www.ncbi.nlm.nih.gov/projects/CCDS/

Flytrap is a database of transposable element insertions in Drosophila melanogaster.
http://www.fly-trap.org/

FlyView is an image database for Drosophila development and genetics, particularly for gene-expression patterns.
http://flyview.uni-muenster.de/

Database about Drosophila genes and their roles in development.
http://www.sdbonline.org/fly/aimain/1aahome.htm

The database includes an initial set of eukaryotic genomic annotations, with special emphasis on the human selenoproteome, for immediate inspection by selenium researchers or incorporation into more general databases.
http://www.selenodb.org/

VBASE2 is a database of germ-line V genes from the immunoglobulin loci of human and mouse. It presents V gene sequences extracted from the EMBL nucleotide sequence database and Ensembl together with links to the respective source sequences.
http://www.vbase2.org/