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A C. elegans DataBase

AceDB is a genome database designed specifically for handling bioinformatic data flexibly.

Pristionchus pacificus - Database"  info

Database about the nematode Pristionchus pacificus, created by the University Tuebingen, Germany.

Candida Genome Database

The Candida Genome Database is a resource for information about the Candida albicans genomic sequence and the molecular biology of its encoded gene products. CGD collects and organizes data from the biological literature concerning C. albicans, and provides tools for viewing, searching, analysing, and downloading these data.

Clusters of Orthologous Groups of Proteins"  info

Clusters of Orthologous Groups of proteins (COGs) were delineated by comparing protein sequences encoded in complete genomes, representing major phylogenetic lineages.

COmparative Regulatory Genomics"  info

CORG stands for COmparative Regulatory Genomics. Non-coding DNA segments that are conserved across multiple homologous genomic sequences are good indicators of putative regulatory elements.

Toxicogenomic Database

dbZACH is a toxicogenomic information management system, built on a relational database and Java technology, used to store a variety of data generated or otherwise relevant to the Zacharewski lab. The goal of the project is to create a local data management product that is capable of serving the needs of small toxicology laboratories.

Toxicogenomic Database

dbZACH is a toxicogenomic information management system, built on a relational database and Java technology, used to store a variety of data generated or otherwise relevant to the Zacharewski lab. The goal of the project is to create a local data management product that is capable of serving the needs of small toxicology laboratories.

Database of Essential Genes"  info

Essential genes are genes that are indispensable to support cellular life. These genes constitute a minimal gene set required for a living cell.

EBI Genomes

EBIís (European Bioinformatics Institute's) collection of databases for the analysis of complete and unfinished viral, pro- and eukaryotic genomes.

Eukaryotic Gene Orthologs

The Eukaryotic Gene Orthologs (EGO), is a database for orthologous genes in eukaryotes.

Enhanced Microbial Genomes Library"  info

EMGLib is a database about the completely sequenced bacterial genomes and the yeast genome.


Ensembl is a joint project between EMBL-EBI and the Sanger Centre to develop a software system which produces and maintains automatic annotation on eukaryotic genomes.

Mycobacterium tuberculosis Database"  info

GenoMycDB was designed for large-scale comparative analysis, offering a variety of searching/retrieving methods. The selection of aligned pairs with specific attributes can be done based on one or multiple alignment parameters (section Filtering Options, sub-section HSP) Ė raw score (Score); bit score (Bits); fraction of identical positions for a given HSP (Identity%).

Gene Ontology Consortium Database"  info

The goal of the Gene OntologyTM (GO) Consortium is to produce a controlled vocabulary that can be applied to all organisms even as knowledge of gene and protein roles in cells is accumulating and changing.

Gene Ontology Annotation (GOA)"  info

The Gene Ontology Annotation (GOA) database aims to provide high-quality electronic and manual annotations to the UniProt Knowledgebase (Swiss-Prot, TrEMBL and PIR-PSD) using the standardized vocabulary of the Gene Ontology (GO).

Genomes OnLine Database"  info

Database of completed and ongoing genome projects.

Hepatitis C - Database

Database about hepatitis C.

Human Gene Nomenclature Database"  info

Database, produced by the HUGO Gene Nomenclature Committee, providing all the gene symbols.

Encyclopedia of Human Genes and Metabolism

HumanCyc is a bioinformatics database that describes the human metabolic pathways and the human genome.

Integrated Microbial Genomes (IMG)

The Integrated Microbial Genomes (IMG) system provides a framework for the comparative analysis of the genomes sequenced by the Joint Genome Institute.

INTEGR_8"  info

Integr8 is a browser for information relating to completed genomes and proteomes, based on data contained in Genome Reviews and the UniProt proteome sets. It provides access to species descriptions, literature, statistical analysis and summary information about each complete proteome; and integrates data from a variety of sources, including InterPro, CluSTr and GO.

IUPHAR Committee on Receptor Nomenclature and Drug Classification Database

Receptor Nomenclature DAtabase by the International Union of Pharmacology (IUPHAR).

Influenza Virus Database (IVDB)

The Influenza Virus Database (IVDB) integrates information and creates an analysis platform for genetic, genomic, and phylogenetic studies of the virus.

Microbial Genome Database for Comparative Analysis

MBGD is a database for comparative analysis of completely sequenced microbial genomes, the number of which is now growing rapidly.

Mouse Genome Database"  info

Mouse Genome Informatics (MGI) provides integrated access to data on the genetics, genomics, and biology of the laboratory mouse.

Parasitic Nematode Sequencing Project"  info is a resource for investigating gene sequences from nematode genomes. The database is an outgrowth of the parasitic nematode EST project at Washington University's Genome Sequencing Center (GSC), St Louis.

Nematode Sequence and Functional Data Database"  info

NEMBASE is a database providing access to the sequence and associated meta-data currently being generated as part of the Edinburgh-Wellcome Trust Sanger Institute parasitic nematode EST project.


Collection of ORFs that are sold by Invitrogen

Protein ANalysis THrough Evolutionary Relationships"  info

The PANTHER database was designed for high-throughput analysis of protein sequences. One of the key features is a simplified ontology of protein function, which allows browsing of the database by biological functions.

PhenomicDB"  info

PhenomicDB is a multi-organism phenotype-genotype database including human, mouse, fruit fly, C.elegans, and other model organisms. The inclusion of gene indexes (NCBI Gene) and orthologues (same gene in different organisms) from HomoloGene in this database allows the user to compare phenotypes of a gene over many organisms simultaneously.

The Plasmodium Genome Resource"  info

PlasmoDB is the official database of the malaria parasite genome project. This resource provides access to finished sequence for Plasmodium falciparum (strain 3D7), generated by the Sanger Institute, TIGR/NMRC, and Stanford, in addition to a wide range of related genomic-scale datasets from other sources.

Rat Genome Database"  info

The Rat Genome Database (RGD) curates and integrates rat genetic and genomic data and provides access to this data to support research using the rat as a genetic model for the study of human disease.

Source"  info

SOURCE is a unification tool which dynamically collects and compiles data from many scientific databases, and thereby attempts to encapsulate the genetics and molecular biology of genes from the genomes of Homo sapiens, Mus musculus, Rattus norvegicus into easy to navigate GeneReports.

TIGR Comprehensive Microbial Resource"  info

The Comprehensive Microbial Resource (CMR) contains robust annotation of all complete microbial genomes and allows for a wide variety of data retrievals.

TIGR Microbial Database

The database contains lists of completed and ongoing genome projects with links to complete genome sequences.

Genomic Comparisons of Membrane Transport Systems

TransportDB is a relational database describing the predicted cytoplasmic membrane transport protein complement for organisms whose complete genome sequence are available.

Viral Bioinformatics Resource Center & Viral Bioinformatics - Canada

This resource provides access to viral genomes and a variety tools for comparative genomic analyses. At the heart of the system is VOCs (Virus Orthologous Clusters), a database with built-in tools that allows users to retrieve and analyze the genes, gene families, and genomes of 11 different virus families. The database is the source of information for other programs of the workbench for whole genome alignments, genome display, or gene/protein sequence analysis.

Comprehensive Viral Genome Resource"  info

Database for complete viral genome sequences.