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AIDS INFO DRUGS
 

The AIDSinfo Drug Database provides HIV/AIDS drug fact sheets describing the drug's use, pharmacology, side effects, and other information. The database includes:

  • Approved and investigational HIV/AIDS drugs
  • Non-technical, technical, and Spanish versions of each fact sheet
    http://aidsinfo.nih.gov/DrugsNew/Default.aspx?MenuItem=Drugs&Search=On

  • AIDS: Clinical Guidelines
     

    AIDS Guidelines, provided by AIDSinfo - a service ofthe U.S.Department of HEalth and Human Services.
    http://aidsinfo.nih.gov/Guidelines/Default.aspx?MenuItem=Guidelines&Search=On

    Clinical Trials on Aids
     

    This page is designed to help you locate trials studying HIV/AIDS. This is a database, produced by the NLM (National Library of Medicine).
    http://aidsinfo.nih.gov/ClinicalTrials/Default.aspx?MenuItem=ClinicalTrials

    Antibiotic Guide / John Hopkins Division of Infectious Diseases
     

    Excellent and clinically relevant guide to antibiotics, produced by the John Hopkins Division of Infectious Diseases. Different versions for handhelds are available.
    http://www.hopkins-abxguide.org/

    Antimicrobial Peptide Database
     

    Antimicrobial peptides exist widely from bacteria to mammals. They are encoded by the genome and produced through regular processes of gene transcription. They have an effect on bacteria, fungi, viruses, and even cancer cells. They can interact directly with biological membranes without requirement for specific receptors on the membranes.
    http://aps.unmc.edu/AP/main.php

    Pristionchus pacificus - Database"  info
     

    Database about the nematode Pristionchus pacificus, created by the University Tuebingen, Germany.
    http://appadb.eb.tuebingen.mpg.de

    Gloal Atlas of Infectious Diseases
     

    Atlas of Infectious Diseases, provided by the WHO.
    http://gamapserver.who.int/GlobalAtlas/home.asp

    BacTregulators
     

    Database about transcriptional regulators of AraC and TetR families.
    http://www.bactregulators.org/

    The University of Minnesota Biocatalysis / Biodegradation Database"  info
     

    This database contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology.
    http://umbbd.msi.umn.edu/

    Genome Atlas Database"  info
     

    Database of sequenced bacterial genomes.
    http://www.cbs.dtu.dk/services/GenomeAtlas/

    Candida Genome Database
     

    The Candida Genome Database is a resource for information about the Candida albicans genomic sequence and the molecular biology of its encoded gene products. CGD collects and organizes data from the biological literature concerning C. albicans, and provides tools for viewing, searching, analysing, and downloading these data.
    http://www.candidagenome.org

    coliBASE
     

    coliBASE is a database for comparative genome analysis of E. coli.
    http://colibase.bham.ac.uk/

    A COMmon DataBASE on Microbial Responses to Food Environments (ComBase)"  info
     

    ComBase is a database protocol that encompasses observations of bacterial responses to food environments.
    http://www.combase.cc/

    Database for Anti-HIV Compounds
     

    Database for Anti-HIV Compounds, made by the NIH, National Institutes of Health, Division of Aids.
    http://www.niaid.nih.gov/daids/dtpdb/

    DExH/D Protein Family Database"  info
     

    DExH/D proteins are essential for all aspects of cellular RNA metabolism and processing, in the replication of many viruses and in DNA replication. DExH/D proteins are subject to current biological, biochemical and biophysical research which provides a continuous wealth of data. The DExH/D protein family database compiles this information and makes it available over the WWW.
    http://www.dexhd.org/

    Database of Bacterial Lipoproteins"  info
     

    Bacterial lipoproteins are a set of proteins modified at their N-terminal with N-Acyl Diacyl Glyceryl group (derived from phospholipids), which serves to anchor these proteins to carry out important functions efficiently at the membrane-aqueous interface.
    http://www.mrc-lmb.cam.ac.uk/genomes/dolop/

    Identification and Diagnosis of Parasites of Public Health Concern (DPDx)"  info
     

    Collection of information about parasitic diseases, maintained by the CDC (Centers for Disease Control and Prevention) / National Center for Infectious Diseases / Division of Parasitic Diseases.
    http://www.dpd.cdc.gov/dpdx/Default.htm

    DPDx Parasite Image Library
     

    Image Library of the CDC (Centers for Disease Control and Prevention) / National Center for Infectious Diseases / Division of Parasitic Diseases.
    http://www.dpd.cdc.gov/dpdx/HTML/Image_Library.htm

    Encyclopedia of Escherichia coli K12 Genes and Metabolism"  info
     

    The EcoCyc database is a source of information on the biology of the prototypical model organism Escherichia coli K12. The mission for EcoCyc is to contain both computable descriptions of, and detailed comments describing, all genes, proteins, pathways and molecular interactions in E.coli.
    http://ecocyc.org/

    European Influenza Surveillance Scheme
     

    This server contains epidemiologic informations about influenza.
    http://www.ecdc.europa.eu/en/activities/surveillance/EISN/Pages/index.aspx

    Enhanced Microbial Genomes Library"  info
     

    EMGLib is a database about the completely sequenced bacterial genomes and the yeast genome.
    http://pbil.univ-lyon1.fr/emglib/emglib.html

    Enzyme Nomenclature Database
     

    The ENZYME database is a repository of information relative to the nomenclature of enzymes. It is primarily based on the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB), and it contains the following data for each type of characterized enzyme for which an EC (Enzyme Commission) number has been provided:

  • EC number
  • Recommended name
  • Alternative names (if any)
  • Catalytic activity
  • Cofactors (if any)
  • Pointers to the Swiss-Prot protein sequence entrie(s) that correspond to the enzyme (if any)
  • Pointers to human disease(s) associated with a deficiency of the enzyme (if any)
    http://us.expasy.org/enzyme/

  • Pox Database
     

    Pox genome database.
    http://bio.dfci.harvard.edu/epipox/

    Malaria Full-Length cDNA Database (Plasmodium falciparum)
     

    Full Malria is a database for a full-length-enriched cDNA library from the human malaria parasite Plasmodium falciparum.
    http://fullmal.ims.u-tokyo.ac.jp/

    Fungal Database
     

    Fungal database, provided by
    The Institute for Genomic Research
    9712 Medical Center Drive
    Rockville, MD 20850
    http://www.tigr.org/tdb/fungal/

    Mycobacterium tuberculosis Database"  info
     

    GenoMycDB was designed for large-scale comparative analysis, offering a variety of searching/retrieving methods. The selection of aligned pairs with specific attributes can be done based on one or multiple alignment parameters (section Filtering Options, sub-section HSP) – raw score (Score); bit score (Bits); fraction of identical positions for a given HSP (Identity%).
    http://www.dbbm.fiocruz.br/GenoMycDB

    HCV Databases"  info
     

    The Hepatitis C Virus (HCV) database project is funded by the Division of Microbiology and Infectious Diseases of the National Institute of Allergies and Infectious Diseases (NIAID). The project comprises two databases:

  • HCV sequence database
  • HCV immunology database
    http://hcv.lanl.gov/

  • Hepatitis C - Database
     

    Database about hepatitis C.
    http://hepatitis.ibcp.fr/

    HealthMap
     

    HealthMap is a global disease alert map. It shows the incidence of infectious diseases.
    http://healthmap.org/en

    HIV - Drug Resistance Database
     

    The database is a compilation of mutations in HIV genes that confer resistance to anti-HIV drugs.
    http://www.hiv.lanl.gov/content/sequence/RESDB/

    HIV - Molecular Immunology Database
     

    The HIV Molecular Immunology Database is an annotated, searchable collection of HIV-1 cytotoxic and helper T-cell epitopes and antibody binding sites. These data are also printed in the HIV Molecular Immunology compendium which is updated yearly and provided free of charge to scientific researchers. The goal of this database is to provide a comprehensive listing of defined HIV epitopes.
    The database is operated by the University of California for the US Department of Energy.
    http://www.hiv.lanl.gov/content/immunology/index.html

    HIV - Sequence Database
     

    The HIV Sequence Database focuses on five primary goals:
    Collecting HIV and SIV sequence data (since 1987)
    Curating and annotating this data, and making it available to the scientific community
    Computer analysis of HIV and related sequences
    Production of software for the analysis of (sequence) data
    Publication of the data and analyses on this site and in a yearly printed publication, the HIV sequence Compendium, which is available free of charge.
    http://www.hiv.lanl.gov/content/sequence/HIV/mainpage.html

    HIV Structural Database and Chem-BLAST
     

    HIV Structural Reference Database and Chem-BLAST at NIST Biotechnology Division, National Institute of Standards and Technology Gaithersburg, MD 20899 U.S.A.
    http://xpdb.nist.gov/hivsdb/hivsdb.html

    HIV-1 / Human Protein Interaction Database
     

    A database about the interaction of human immunodeficiency virus type 1 (HIV-1) proteins with those of the host cell, created by the National Institute of Allergy & Infectious Diseases.
    http://www.ncbi.nlm.nih.gov/RefSeq/HIVInteractions/

    HIV-Guide
     

    HIV-Guide provided by the John Hopkins University.
    http://hopkins-hivguide.org/

    HIV / SIV VACCINE TRIALS DATABASE
     

    The HIV/SIV Vaccine Trials Database was developed as a tool for compilation, search and comparison of published studies on SIV, HIV and SHIV vaccine trials in nonhuman primates.
    http://www.hiv.lanl.gov/content/vaccine/home.html

    Universal Virus Database of the International Committee on Taxonomy of Viruses
     

    The Universal Virus Database of the International Committee on Taxonomy of Viruses is developed and maintained by Dr Cornelia Büchen-Osmond at the Biomedical Informatics Core of the Northeastern Biodefense Center, a Regional Center of Excellence in Emerging Infectious Diseases and Biodefense, Columbia University, New York, NY, USA.
    http://www.ncbi.nlm.nih.gov/ICTVdb/

    Integrated Microbial Genomes (IMG)
     

    The Integrated Microbial Genomes (IMG) system provides a framework for the comparative analysis of the genomes sequenced by the Joint Genome Institute.
    http://img.jgi.doe.gov/

    Influenza Sequence Database
     

    The Influenza Sequence Database is a curated database of nucleotide sequences. It is intended to provide the research community with easy sequence deposit and retrieval capabilities, together with tools tailored, in particular, to the analysis of hemagglutinin and neuraminidase sequences.
    This database is operated by the University of California for the US Department of Energy
    http://www.flu.lanl.gov/

    Influenza Virus Database (IVDB)
     

    The Influenza Virus Database (IVDB) integrates information and creates an analysis platform for genetic, genomic, and phylogenetic studies of the virus.
    http://influenza.big.ac.cn/

    Malaria - Metabolic Pathways
     

    Metabolic pathways of plasmodium falciparum; a database, provided by the Hebrew University of Jerusalem, compiled and maintained by Hagai Ginsburg.
    http://sites.huji.ac.il/malaria/

    DeRisi Lab Malaria Transcriptome Database"  info
     

    Database about the Malaria Transcriptome, provided by the University of California San Francisco.
    http://malaria.ucsf.edu/

    Database of Malarial Vaccine Candidates (MalVac)"  info
     

    MalVac is a database for Malarial Vaccine Candidates. It contains a detailed analysis of proteins from various Plasmodium species, especially those involved in the adhesion process and are likely to play an important role as vaccine candidates. It contains information regarding the probability of a Plasmodium protein being an adhesin (MAAP Score), the number of paralogs, orthologs, number of transmenbrane helices, signal peptides, beta wraps and the topology of the protein . It also provides information about conserved domains present in the protein and the top blastp results.
    http://malvac.igib.res.in/

    Marine Microbial Biodiversity Database"  info
     

    Micro-Mar is a database for dynamic representation of marine microbial biodiversity.
    http://egg.umh.es/micromar/

    The Microbial Rosetta Stone Database"  info
     

    The Microbial Rosetta Stone Database provides access to up-to-date taxonomic classifications of organisms that cause human diseases, improves the consistency of nomenclature in disease reporting, and provides useful links between different public genomic and public health databases.
    http://www.microbialrosettastone.com/

    Material Safety Data Sheets (MSDS)
     

    Material Safety Data Sheets (MSDS), regulated under Workplace Hazardous Materials Information System (WHMIS) legislation, for chemical products have been available to workers for many years. However because many laboratory workers, whether in research, public health, teaching, etc., are exposed to not only chemicals but infectious substances as well, there was a large gap in the readily available safety literature for employees. These MSDS are produced for personnel working in the life sciences as quick safety reference material relating to infectious micro-organisms.
    http://www.phac-aspc.gc.ca/msds-ftss/index.html

    Collections of Fungus and Lichen Cultures
     

    MycologyNet provides amongst COLLECTIONS | CULTURES a list of databases containing fungal cultures.
    http://www.mycology.net/

    Neisseria meningitidis / MLST
     

    Database about Neisseria meningitidis.
    http://pubmlst.org/perl/mlstdbnet/mlstdbnet.pl?file=pub-nm_profiles.xml

    Parasitic Nematode Sequencing Project"  info
     

    Nematode.net is a resource for investigating gene sequences from nematode genomes. The database is an outgrowth of the parasitic nematode EST project at Washington University's Genome Sequencing Center (GSC), St Louis.
    http://nematode.net/

    Nematode Sequence and Functional Data Database"  info
     

    NEMBASE is a database providing access to the sequence and associated meta-data currently being generated as part of the Edinburgh-Wellcome Trust Sanger Institute parasitic nematode EST project.
    http://www.nematodes.org

    Oral Pathogen Sequence Databases
     

    The scope of the project includes molecular information pertaining to oral pathogens, bacterial and viral.
    http://www.oralgen.lanl.gov/

    Parasites Database
     

    Parasite - Genome database, produced by the 9712 Medical Center Drive Rockville, MD 20850
    http://www.tigr.org/tdb/parasites/

    The Plasmodium falciparum Genome Database
     

    Database about the Genome of the Malaria causing Plasmodium falciparum.
    http://www.tigr.org/tdb/edb2/pfa1/htmls/

    Plasmid Genome Database"  info
     

    PGD is a collection of sequenced plasmids with links to structural maps of each plasmid.
    http://www.genomics.ceh.ac.uk/plasmiddb/

    Prokaryotic Growth Temperature Database"  info
     

    Included in PGTdb (Prokaryotic Growth Temperature database) are a total of 1334 temperatures, from 1072 prokaryotic organisms, Bacteria and Archaea. PGTdb integrates microorganisms' growth temperature data from literature survey with their nucleotide/protein sequence, protein family and structure data from related databases.
    http://pgtdb.csie.ncu.edu.tw/

    The Big Picture Book of Viruses
     

    The Big Picture Book of Viruses is intended to serve as both a catalog of virus pictures on the Internet and as an educational resource to those seeking more information about viruses. Provided by David M. Sander, Tulane Medical Center.
    http://www.virology.net/Big_Virology/BVHomePage.html

    The Plasmodium Genome Resource"  info
     

    PlasmoDB is the official database of the malaria parasite genome project. This resource provides access to finished sequence for Plasmodium falciparum (strain 3D7), generated by the Sanger Institute, TIGR/NMRC, and Stanford, in addition to a wide range of related genomic-scale datasets from other sources.
    http://plasmodb.org/

    Prokaryotic Lysis Enzymes Site
     

    ProLysES is a database of bacterial protease systems.
    http://genome.ukm.my/prolyses/

    Mouse Retroviral Tagged Cancer Gene Database"  info
     

    Retroviral insertional mutagenesis in mouse hematopoietic tumors provides a potent cancer gene discovery tool in the post-genome-sequence era. To manage multiple high-throughput insertional mutagenesis screening projects, the Retroviral Tagged Cancer Gene Database was developed.
    http://rtcgd.ncifcrf.gov/

    Recombinant Virus Database"  info
     

    The Recombinant Virus Database (RVD) is a database of DNA clones, recombinant retroviruses and recombinant adenoviruses.
    http://www.brc.riken.jp/lab/dna/rvd/

    SARS (Severe Acute Respiratory Syndrome ) Reference
     

    SARS Reference is a medical textbook that provides a comprehensive and up-to-date overview of severe acute respiratory syndrome (SARS).
    http://www.sarsreference.com/

    Stress-Induced DNA Duplex Destabilization (SIDD) - Database"  info
     

    SIDDBASE is a database containing the stress-induced DNA duplex destabilization (SIDD) profiles of complete microbial genomes.
    http://www.cbs.dtu.dk/ws/ws.php?entry=SIDDbase

    Subviral RNA Database"  info
     

    SubViral RNA: a database of the smallest known auto-replicable RNA species.
    http://subviral.med.uottawa.ca/

    TIGR Comprehensive Microbial Resource"  info
     

    The Comprehensive Microbial Resource (CMR) contains robust annotation of all complete microbial genomes and allows for a wide variety of data retrievals.
    http://www.tigr.org/tigr-scripts/CMR2/CMRHomePage.spl

    TIGR Microbial Database
     

    The database contains lists of completed and ongoing genome projects with links to complete genome sequences.
    http://www.tigr.org/tdb/mdb/mdbcomplete.html

    IARC TP53 Mutation Database"  info
     

    In 1991, a database of TP53 somatic mutations in human cancers and cell-lines was initiated by Monica Hollstein and Curtis Harris. Since 1994, this database has been maintained at the International Agency for Research on Cancer (IARC) in Lyon, France and is made freely available as a service to the scientific community.
    The IARC TP53 Mutation Database is now maintained by the Unit of Molecular Carcinogenesis (MOC) at IARC, under the supervision of Pierre Hainaut.
    The project consists of three aspects:
    Perform regular review of the TP53 mutation literature
    Develop electronic formats for compiling, sorting and retrieving mutation data
    Perform research on TP53 mutation patterns
    http://www-p53.iarc.fr/

    TubercuList
     

    Database about the Genome of Mycobacterium tuberculosis.
    http://tuberculist.epfl.ch/

    Viral Bioinformatics Resource Center & Viral Bioinformatics - Canada
     

    This resource provides access to viral genomes and a variety tools for comparative genomic analyses. At the heart of the system is VOCs (Virus Orthologous Clusters), a database with built-in tools that allows users to retrieve and analyze the genes, gene families, and genomes of 11 different virus families. The database is the source of information for other programs of the workbench for whole genome alignments, genome display, or gene/protein sequence analysis.
    http://athena.bioc.uvic.ca/

    Virus Database at University College London"  info
     

    VIDA is a virus database that organizes open reading frames (ORFs) from partial and complete genomic sequences from animal viruses.
    http://www.biochem.ucl.ac.uk/bsm/virus_database/VIDA.html

    Virus Particle Explorer (viper)"  info
     

    VIPER is a Website for virus capsid structures and their computational analyses.
    http://viperdb.scripps.edu/

    Comprehensive Viral Genome Resource"  info
     

    Database for complete viral genome sequences.
    http://115.111.37.206/virgen/virgen.asp

    Virus-Specific Oligonucleotides Database"  info
     

    VirOligo is a database of virus-specific oligonucleotides.
    http://viroligo.okstate.edu

    Web Atlas of Medical Parasitology
     

    Parasitology-Atlas, provided by the Korean Society of Parasitology.
    http://www.atlas.or.kr/

    WormBase"  info
     

    WormBase is the central data repository for information about Caenorhabditis elegans and related nematodes.
    http://www.wormbase.org/

    YEAST Protein Complex Database"  info
     

    This website contains the information on protein-protein interactions and protein complex worked out by a group of scientists at Cellzome AG and the European Molecular Biology Laboratory in Heidelberg, Germany.
    http://yeast-complexes.embl.de/